Dissertation Defense Seminar - Emma Clarkson

June 16, 2021
9:00 am
June 16, 2021
10:00 am
Harte Research Institute
Conference Center 127
6300 Ocean Drive, Corpus Christi, TX 78412
This seminar is also available to view via WebEx



SUBJECT:  A hierarchical approach to incorporating habitat assessment into an existing fisheries monitoring framework

MAJOR ADVISOR:  Dr. Jennifer Pollack



The extent and quality of estuarine habitat has a significant influence on the growth, recruitment, and survival of fish and invertebrate species. The Sustainable Fisheries Act of 1996, part of the Magnuson Stevens Fisheries Conservation and Management Act, mandated designation and monitoring of “Essential Fish Habitat” (EFH), creating the need for efficient, effective, and accurate approaches for monitoring habitat at multiple spatial scales. Because the relationships between fisheries species and their associated habitats are complex and can vary across ontogenies and regions, approaches to monitoring faunal-habitat associations are also needed to quantify the impact of EFH on fisheries stocks. However, funding limitations can prohibit monitoring fauna, habitat, and faunal-habitat associations at the multiple spatial and temporal scales necessary to accurately quantify faunal response to habitat change.  The resulting information gap creates challenges to using science to inform decision making, especially in cases of reactive management decisions that are typical of state agencies.

This dissertation explores the resource management potential of utilizing free, publicly available datasets to examine estuarine faunal-habitat associations at multiple spatial scales in Texas. A hierarchical approach was used to link three tiers of habitat data to faunal abundance data from Texas Parks and Wildlife Department’s (TPWD) Fisheries Independent Monitoring (FIM) program to evaluate the influence of habitat availability and quality on target species’ occurrence and abundance. Target species were selected based on their commercial and recreational importance and included Spotted Seatrout (Cynoscion nebulosus), Red Drum (Sciaenops ocellatus), Atlantic croaker (Micropogonias undulatus), Blue crab (Callinectes sapidus), Brown shrimp (Farfantepenaeus aztecus), and White shrimp (Litopenaeus setiferus). The three tiers are used to monitor fauna and associated fauna at multiple spatial and temporal scales and range from broad, large spatiotemporal scale assessments using remote sensing (Tier 1) to more detailed in-situ observations used to capture causal relationships (Tier 3). In this study, the three tiers  of habitat data include: (Tier 1) a publicly available, remotely sensed habitat mapping product (2004 NOAA Benthic Atlas) that describes habitat presence and extent across large spatial scales, (Tier 2) the Texas seagrass monitoring program, in which seagrass quality (percent cover and species composition) is characterized annually at fixed sampling stations, and (Tier 3) a rapid, in-situ habitat assessment incorporated into the FIM methodology and conducted concurrently with bag seine sampling to monitor real-time faunal response to habitat change.

The ability of all tiered approaches to detect known faunal-habitat associations demonstrates their efficacy. Structural subtidal (seagrass) and intertidal (saltmarsh and mangrove) presence and quality significantly impacted faunal occurrence and abundance. Several cases of facultative habitat use were identified, and faunal-habitat associations were typically scale-dependent and spatially explicit. The strengths and weaknesses of each tiered approach were evaluated to exemplify how complementary use of tiered data from multi-scale hierarchical monitoring can be used to fill gaps associated with any single method. The cost-effective approaches utilized in this study can be translated to any management region where both Fisheries Independent Monitoring (FIM) data and existing habitat mapping and monitoring data products are available. The faunal-habitat associations characterized in this study provide a step toward quantitatively and qualitatively incorporating habitat into fisheries management decisions.




Meeting number: 133 044 3053
Password: HRI_2021 (47402021 from phones)

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